Crawled SPARQL Endpoint list

This page shows a list of SPARQL endpoints crawled by our SPARQL BUILDER CRAWLER .

As of Dec. 2014, 39 Endpoins are listed and 2 Endpoints cannot be crawled because of fatal errors.

Datatype Function error occurred (especially on Virtuoso 7.10) that returns an error when datatype function is used in a SPARQL query.

The latest crawler results with errors are replaced with previous successful results.

The complete list including statistics in PDF is here (crawlList201412).

 

Data PublisherDatabase NameEndpoint URLNumber of classesNumber of Instances
Remarks
EBIExpression Atlas
http://www.ebi.ac.uk/rdf/services/atlas/sparql
183671373673-
BioModelshttp://www.ebi.ac.uk/rdf/services/biomodels/sparql
34
158441036
-
BioSampleshttp://www.ebi.ac.uk/rdf/services/biosamples/sparql
57562088741
-
ChEMBLhttp://www.ebi.ac.uk/rdf/services/chembl/sparql
105
316052594
-
Reactome
http://www.ebi.ac.uk/rdf/services/reactome/sparql
46
11488883
-
Bio2RDfAffymetrix probesets
http://cu.affymetrix.bio2rdf.org/sparql
60
77414449
Datatype Function Error
BioPortal
http://cu.bioportal.bio2rdf.org/sparql
1839
12178602
Datatype Function Error
ClinicalTrials.gov
http://cu.clinicaltrials.bio2rdf.org/sparql
9079208800
Datatype Function Error
Comparative Toxicogenomics Database
http://cu.ctd.bio2rdf.org/sparql
46
14365261
Datatype Function Error
Database of single nucleotide polymorphism
http://cu.dbsnp.bio2rdf.org/sparql
39
7756587
Datatype Function Error
DrugBank
http://cu.drugbank.bio2rdf.org/sparql
1193060397
Datatype Function Error
GenAge: The Ageing Gene Database
http://cu.genage.bio2rdf.org/sparql
3563283
Datatype Function Error
GenDR: The Dietary Restriction Gene Database
http://cu.gendr.bio2rdf.org/sparql
3511001
Datatype Function Error
Gene Ontology Annotation
http://cu.goa.bio2rdf.org/sparql
3431341421
Datatype Function Error
HUGO Gene Nomenclature Committee
http://cu.hgnc.bio2rdf.org/sparql
443310561
Datatype Function Error
NCBI Homologene
http://cu.homologene.bio2rdf.org/sparql
336232827
Datatype Function Error
Integrated resource of protein families, domains and functional sites
http://cu.interpro.bio2rdf.org/sparql
522098994
Datatype Function Error
Integrated Protein Knowledgebase
http://cu.iproclass.bio2rdf.org/sparql
--Timeout Error
Interaction Reference Index
http://cu.irefindex.bio2rdf.org/sparql
10643803866
Datatype Function Error
Kyoto Encyclopedia of Genes and Genomes
http://cu.kegg.bio2rdf.org/sparql
8843270994
Datatype Function Error
Linked Structured Product Label
http://cu.linkedspl.bio2rdf.org/sparql
171998638
Datatype Function Error
The Life Science Resource Registry
http://cu.lsr.bio2rdf.org/sparql
3446649
Datatype Function Error
Medical Subject Headings
http://cu.mesh.bio2rdf.org/sparql
336354158
Datatype Function Error
Mouse genome database (MGD) from Mouse Genome Informatics (MGI)
http://cu.mgi.bio2rdf.org/sparql
467019958
Datatype Function Error
NCBI Gene
http://cu.ncbigene.bio2rdf.org/sparql
58124541269
Datatype Function Error
National Drug Code Directory
http://cu.ndc.bio2rdf.org/sparql
384738201
Datatype Function Error
Online Mendelian Inheritance in Man
http://cu.omim.bio2rdf.org/sparql
577300495
Datatype Function Error
Orphanet; a database dedicated to information on rare diseases and orphan drugs
http://cu.orphanet.bio2rdf.org/sparql
51310215
Datatype Function Error
Pathway Commons
http://cu.pathwaycommons.bio2rdf.org/sparql
614684250
Datatype Function Error
Pharmacogenomics Knowledge Base
http://cu.pharmgkb.bio2rdf.org/sparql
7322348245
Datatype Function Error
PubMed
http://cu.pubmed.bio2rdf.org/sparql
--DNS Error
SABIO-RKSABIO-RK
http://cu.sabiork.bio2rdf.org/sparql
562197809
Datatype Function Error
Saccharomyces Genome Database
http://cu.sgd.bio2rdf.org/sparq
1149844748
Datatype Function Error
Side Effect Resource
http://cu.sider.bio2rdf.org/sparql
4014008305
Datatype Function Error
NCBI Taxonomy
http://cu.taxonomy.bio2rdf.org/sparql
3719647873
Datatype Function Error
WikiPathways
http://cu.wikipathways.bio2rdf.org/sparql
24218527
Datatype Function Error
WormBase
http://cu.wormbase.bio2rdf.org/sparql
6516415316
Datatype Function Error
Database Center for Life SciencesA Search Service for Abbreviation / Long Formhttp://data.allie.dbcls.jp/sparql10
101311432
Datatype Function Error
Life Science Dictionary
http://lsd.dbcls.jp/sparql
145193415
Datatype Function Error